Resources for Core Promoter Investigation


 Elements Navigation Tool   Link 

ElemeNT is an interactive tool for rapid and convenient detection of core promoter elements within a given sequence.

The input sequence (plain text or FASTA format) is searched against the known core promoter elements to generate the probability score for each element. 

Only the elements with scores above the specified cutoffs are displayed in the output table.


   A Drosophila melanogaster Database   Link

The CORE database utilizes the ElemeNT algorithm to annotate putative core promoter elements among CAGE and RNAseq-defined Drosophila melanogaster TSSs, organized into an Excel file. The goal of the database is to present a comprehensive annotation of the Drosophila melanogaster transcriptome with corepromoter elements. 


The paper describing the above resources is now available!

Command line versions are available upon request. For further information, please This email address is being protected from spambots. You need JavaScript enabled to view it. .







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